{
  "_id": "6ae8583e2e87f76f20ace954",
  "Package": "multipoolR",
  "Title": "Efficient Multi-Locus Genetic Mapping in R",
  "Version": "0.10.5",
  "Authors@R": "person(\"Carson\", \"Stacy\", , \"clstacy.stat@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "An R package port for Multitool for efficient multi-locus\ngenetic mapping of quantitative traits using a multi-pool\nsequencing approach. The package implements a Bayesian\nhierarchical model to estimate allele frequencies and test for\nassociations between genetic variants and phenotypes. It\nprovides functions for data preprocessing, model fitting, and\nvisualization of results.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "LazyData": "true",
  "Config/pak/sysreqs": "cmake make libbz2-dev liblzma-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev",
  "Repository": "https://clstacy.r-universe.dev",
  "Date/Publication": "2025-12-26 13:37:34 UTC",
  "RemoteUrl": "https://github.com/clstacy/multipoolR",
  "RemoteRef": "HEAD",
  "RemoteSha": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-02 08:41:55 UTC",
    "User": "root"
  },
  "Author": "Carson Stacy [aut, cre]",
  "Maintainer": "Carson Stacy <clstacy.stat@gmail.com>",
  "_user": "clstacy",
  "_type": "src",
  "_file": "multipoolR_0.10.5.tar.gz",
  "_fileid": "https://r2.ropensci.org/18b79e106a78be3a82b9a5d3ef3492eb77f33b881cf129e0e6522f30830ae068",
  "_filesize": 418637,
  "_sha256": "18b79e106a78be3a82b9a5d3ef3492eb77f33b881cf129e0e6522f30830ae068",
  "_expires": "2027-02-10T09:30:36.000Z",
  "_created": "2026-11-02T08:41:55.000Z",
  "_published": "2026-11-02T09:30:38.346Z",
  "_upstream": "https://github.com/clstacy/multipoolR",
  "_status": "success",
  "_maintainer": {
    "name": "Carson Stacy",
    "email": "clstacy.stat@gmail.com",
    "login": "clstacy",
    "twitter": "@carsonlstacy",
    "description": "Cancer Epigenetics and Statistics. Royal College of Surgeons in Ireland. Post-doctoral Researcher.",
    "uuid": 60114373
  },
  "_jobs": [
    {
      "job": 125176701018,
      "time": 308,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "13126999882"
    },
    {
      "job": 125176701057,
      "time": 297,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13126688711"
    },
    {
      "job": 125176700882,
      "time": 345,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "13130006450"
    },
    {
      "job": 125176700915,
      "time": 325,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13130385530"
    },
    {
      "job": 125174915458,
      "time": 263,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13126869188"
    },
    {
      "job": 125176700864,
      "time": 156,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13127237729"
    },
    {
      "job": 125176700924,
      "time": 266,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "13126589553"
    },
    {
      "job": 125176700914,
      "time": 249,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "13127396726"
    },
    {
      "job": 125176700993,
      "time": 250,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "WARNING",
      "artifact": "13127047980"
    }
  ],
  "_buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307",
  "_commit": {
    "id": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
    "author": "Carson Stacy <clstacy.stat@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update DESCRIPTION file with package suggestions\n\nAdjust Imports for r-universe",
    "time": 1766756254
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "version": ">= 1.2.0",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "AnnotationDbi",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "future.apply",
      "role": "Imports"
    },
    {
      "package": "GenomeInfoDb",
      "role": "Imports"
    },
    {
      "package": "GenomicFeatures",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene",
      "role": "Imports"
    },
    {
      "package": "org.Sc.sgd.db",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Imports"
    }
  ],
  "_owner": "clstacy",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-52",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "clstacy",
      "count": 4,
      "uuid": 60114373
    }
  ],
  "_userbio": {
    "uuid": 60114373,
    "type": "user",
    "name": "Carson Stacy",
    "followers": 2,
    "description": "Cancer Epigenetics and Statistics. Royal College of Surgeons in Ireland. Post-doctoral Researcher."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/multipoolR"
  },
  "_devurl": "https://github.com/clstacy/multipoolr",
  "_searchresults": 3,
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/multipoolR.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "multipool"
  ],
  "_datasets": [
    {
      "name": "multipoolR_example_pool1",
      "title": "Example Multipool Data with Sloped QTLs",
      "object": "multipoolR_example_pool1",
      "class": [
        "data.frame"
      ],
      "fields": [
        "chr",
        "pos",
        "a",
        "b"
      ],
      "rows": 7000,
      "table": true,
      "tojson": true
    },
    {
      "name": "multipoolR_example_pool2",
      "title": "Example Multipool Data with Sloped QTLs",
      "object": "multipoolR_example_pool2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "chr",
        "pos",
        "a",
        "b"
      ],
      "rows": 7000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "multipool",
      "title": "Perform Multipool Genome Scan",
      "topics": [
        "multipool"
      ]
    },
    {
      "page": "multipool_example_data",
      "title": "Example Multipool Data with Sloped QTLs",
      "topics": [
        "multipoolR_example_pool1",
        "multipoolR_example_pool2",
        "multipool_example_data"
      ]
    },
    {
      "page": "multipoolR",
      "title": "multipoolR: Multipool QTL Mapping in R",
      "topics": [
        "multipoolR"
      ]
    }
  ],
  "_readme": "https://github.com/clstacy/multipoolR/raw/HEAD/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "backports",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "BiocIO",
    "BiocParallel",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "brio",
    "cachem",
    "callr",
    "checkmate",
    "cigarillo",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "desc",
    "diffobj",
    "digest",
    "evaluate",
    "farver",
    "fastmap",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "future",
    "future.apply",
    "generics",
    "GenomeInfoDb",
    "GenomicAlignments",
    "GenomicFeatures",
    "GenomicRanges",
    "ggplot2",
    "ggrepel",
    "globals",
    "glue",
    "gtable",
    "httr",
    "IRanges",
    "isoband",
    "jsonlite",
    "KEGGREST",
    "labeling",
    "lambda.r",
    "lifecycle",
    "listenv",
    "magrittr",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "org.Sc.sgd.db",
    "otel",
    "parallelly",
    "pkgbuild",
    "pkgconfig",
    "pkgload",
    "png",
    "praise",
    "processx",
    "ps",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "rprojroot",
    "Rsamtools",
    "RSQLite",
    "rtracklayer",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "snow",
    "sys",
    "testthat",
    "TxDb.Scerevisiae.UCSC.sacCer3.sgdGene",
    "UCSC.utils",
    "vctrs",
    "viridisLite",
    "waldo",
    "withr",
    "XML",
    "XVector",
    "yaml"
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "multipoolr",
  "_universes": [
    "clstacy"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.10.5",
      "date": "2026-11-02T08:45:10.000Z",
      "distro": "resolute",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/db6ee39583c249275884147d1197e21848cac73df80d7d60e43e93ff3bbf4df5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "0.10.5",
      "date": "2026-11-02T08:45:09.000Z",
      "distro": "resolute",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/4cc164953b0fb20a6da6c983bc06e6963de97a1856367af7eec11982140ea927",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.10.5",
      "date": "2026-11-02T09:25:34.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/f06013bb3c81312a58cd06803d427ae6ff582a39056691809eb0d6e086c4802d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "0.10.5",
      "date": "2026-11-02T09:27:22.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/77bcfff878907b1310cd021a104ded883599fb5f1b3817602f289a2be97fd8d0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.10.5",
      "date": "2026-11-02T08:45:07.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/70714b42717ff6f159d416afb065e9e736b2f6bb77cfc7f6432a815d389e98dd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.10.5",
      "date": "2026-11-02T08:44:12.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/8622dd254808f3c9b0dc42092aa1fc26b0461a92c2c36acefe912fc5ec300dd5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.10.5",
      "date": "2026-11-02T08:44:01.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/f2c1e04f7ddbe946cbcc575fdb2c8c528392f865e96e5e27bdd9edddb2d829a4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "0.10.5",
      "date": "2026-11-02T08:44:03.000Z",
      "commit": "9ea6c2f54a0d3f768c3ff80a91fb0d7b8bb84ae6",
      "fileid": "https://r2.ropensci.org/17fc5d32076e738d6697bc986ec7235f65d54f321b579a6eeaee89d92edc61ec",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/clstacy/actions/runs/41414445307"
    }
  ]
}