Package: multipoolR 0.10.5

multipoolR: Efficient Multi-Locus Genetic Mapping in R

An R package port for Multitool for efficient multi-locus genetic mapping of quantitative traits using a multi-pool sequencing approach. The package implements a Bayesian hierarchical model to estimate allele frequencies and test for associations between genetic variants and phenotypes. It provides functions for data preprocessing, model fitting, and visualization of results.

Authors:Carson Stacy [aut, cre]

multipoolR_0.10.5.tar.gz
multipoolR_0.10.5.zip(r-4.7)multipoolR_0.10.5.zip(r-4.6)multipoolR_0.10.5.zip(r-4.5)
multipoolR_0.10.5.tgz(r-4.6-any)multipoolR_0.10.5.tgz(r-4.5-any)
multipoolR_0.10.5.tar.gz(r-4.7-any)multipoolR_0.10.5.tar.gz(r-4.6-any)
multipoolR_0.10.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
multipoolR/json (API)

# Install 'multipoolR' in R:
install.packages('multipoolR', repos = c('https://clstacy.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/clstacy/multipoolr/issues

Datasets:

On CRAN:

Conda:

1.70 score 3 scripts 1 exports 107 dependencies

Last updated from:9ea6c2f54a. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING410
source / vignettesOK276
linux-release-x86_64WARNING391
macos-release-arm64WARNING328
macos-oldrel-arm64WARNING312
windows-develWARNING366
windows-releaseWARNING433
windows-oldrelWARNING369
wasm-releaseOK166

Exports:multipool

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbriocachemcallrcheckmatecigarilloclicodetoolscpp11crayoncurldata.tableDBIDelayedArraydescdiffobjdigestevaluatefarverfastmapformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggrepelglobalsgluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelistenvmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Sc.sgd.dbparallellypkgbuildpkgconfigpkgloadpngpraiseprocessxpsR6RColorBrewerRcppRCurlrestfulrRhtslibrjsonrlangrprojrootRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystestthatTxDb.Scerevisiae.UCSC.sacCer3.sgdGeneUCSC.utilsvctrsviridisLitewaldowithrXMLXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Perform Multipool Genome Scanmultipool
Example Multipool Data with Sloped QTLsmultipoolR_example_pool1 multipoolR_example_pool2 multipool_example_data
multipoolR: Multipool QTL Mapping in RmultipoolR