R-universe - clstacy (Carson Stacy)

Paralogs - Visualizing Differential Expression of Paralogs in KEGG Gene Pathways

This package provides functions to visualize the differential expression of paralogs in KEGG gene pathways. The package includes functions to download KEGG gene pathways, extract paralogs from the pathways, and visualize the differential expression of the paralogs. The package also includes functions to visualize the expression of paralogs in the context of the KEGG gene pathways.

Last updated

2.70 score 1 stars 4 scripts

ordinalMIC - Minimum Inhibitory Concentration Estimation from Ordinal Regression Models

Provides tools to estimate minimum inhibitory concentration (MIC) and conduct rigorous pairwise comparisons (delta, fold‑change, and difference of difference tests) from cumulative‑link models fitted with 'ordinal::clm'.

Last updated

2.60 score 4 scripts

multipoolR - Efficient Multi-Locus Genetic Mapping in R

An R package port for Multitool for efficient multi-locus genetic mapping of quantitative traits using a multi-pool sequencing approach. The package implements a Bayesian hierarchical model to estimate allele frequencies and test for associations between genetic variants and phenotypes. It provides functions for data preprocessing, model fitting, and visualization of results.

Last updated

1.70 score 3 scripts